Index (GridSAM API Documentation gridsam 1.0)

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A

ABORT - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: abort the whole pipeline altogether
ACTIVE - Static variable in class org.icenigrid.gridsam.core.JobState: The job has received resource, and the application is executing
ALWAYS_ABORT_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: criteria implementation that will always stop progress
ALWAYS_PROGRESS_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: criteria implementation that will always progress
AbstractDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager.: Created by IntelliJ IDEA.
AbstractDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager
AbstractShell - class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.: Abstract implementation of Shell
AbstractShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AbstractShell
AbstractShell.PipeRunnable - class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.PipeRunnable.: a runnable that takes input from an ReadableByteChannel and write the input to the WritableByteChannel
AbstractShell.PipeRunnable(Reader, int, CommandListener) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.PipeRunnable: pipe input from pInputChannel to pOutputChannel
AbstractShellStage - class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage.: An abstract DRMConnector stage that requires a Shell to operate
AbstractShellStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage
AccumulatedCommandListener - class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener.: CommandListener implementation that accumulates the output/error stream data as a string
AccumulatedCommandListener() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener
AlwaysFailDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailDRMConnector.: A DRMConnector that always fail.
AlwaysFailDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailDRMConnector
AlwaysFailFileSystemProvider - class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailFileSystemProvider.: FileSystemProvider implementation that always fail
AlwaysFailFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailFileSystemProvider
AuthorisationFaultMessage - exception org.icenigrid.gridsam.client.api.AuthorisationFaultMessage.
AuthorisationFaultMessage(SOAPElement) - Constructor for class org.icenigrid.gridsam.client.api.AuthorisationFaultMessage
addCalendar(String, Calendar, boolean, boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addCapabilities(Collection) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: Adds the capabilities of this file system.
addCondorEventListener(CondorEventListener) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: add a CondorEventListener
addElement(PublicKeyAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
addElement(PasswordAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
addGlobalJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addGlobalTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addJob(JobDetail, boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addJobStage(JobState, String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: add a job stage
addSchedulerListener(SchedulerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
addTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
advanceJobState(JobState, String) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance: advance the state of this job to pState
advanceJobState(JobState, String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: advance the state of this job to pState
afterTransactionBegin(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor
afterTransactionCompletion(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor
append(FileObject, FileObject) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: copy the content of a virtual file from pFrom to another (optionally append the file content to the end of the pTo file) Note.
assemble(Serializable, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum
assertMatches(Document, String) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: assert that the JSDL document matches with the given XPath expression (i.e.
authorise(String) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: authorise the current caller with the role

B

beforeTransactionCompletion(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor
begin() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore: begin a persistence store transaction
begin() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: begin a persistence store transaction
buildJobManager() - Method in interface org.icenigrid.gridsam.core.JobManagerBuilder: build a job manager instance from the information collected by this object

C

CAPABILITIES - Static variable in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider: capabilities
CONTINUE - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: continue with the recurring task if it is not finished or skip to the next stage if the task would be finishing
ClientSideJobManager - class org.icenigrid.gridsam.client.common.ClientSideJobManager.: JobManager implementation that delegates submission functionality to a remote GridSAM web service
ClientSideJobManager(String) - Constructor for class org.icenigrid.gridsam.client.common.ClientSideJobManager: create a client side job manager that submits job to a GridSAM service running at the given address
ClientSideJobManager(String[], Options) - Constructor for class org.icenigrid.gridsam.client.common.ClientSideJobManager: create a client side job manager from a set of standard command-line arguments
CommandListener - interface org.icenigrid.gridsam.core.plugin.shell.CommandListener.
CondorEventAdapter - class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter.: Adapter class for CondorEventListener interface
CondorEventAdapter() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter: default constructor.
CondorEventAdapter(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter: 1-arg constructor
CondorEventListener - interface org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventListener.: Interface representing a listener for condor event
ConfigurationException - exception org.icenigrid.gridsam.core.ConfigurationException.: Extension to JobManagerException that indicates a configuration error
ConfigurationException() - Constructor for class org.icenigrid.gridsam.core.ConfigurationException: Constructs a new exception with null as its detail message.
ConfigurationException(String) - Constructor for class org.icenigrid.gridsam.core.ConfigurationException: Constructs a new exception with the specified detail message.
ConfigurationException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.ConfigurationException: Constructs a new exception with the specified detail message and cause.
ConfigurationException(Throwable) - Constructor for class org.icenigrid.gridsam.core.ConfigurationException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
ControlException - exception org.icenigrid.gridsam.core.ControlException.: Exception thrown when there is an error in the job submission process
ControlException() - Constructor for class org.icenigrid.gridsam.core.ControlException: Constructs a new exception with null as its detail message.
ControlException(String) - Constructor for class org.icenigrid.gridsam.core.ControlException: Constructs a new exception with the specified detail message.
ControlException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.ControlException: Constructs a new exception with the specified detail message and cause.
ControlException(Throwable) - Constructor for class org.icenigrid.gridsam.core.ControlException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
cleanupThread() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
close() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore: close the persistence store
close() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: close the persistence store connection
close() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: close this shell and release all used resources
close() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell: close this shell and release all used resources
close() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: close this shell and release all used resources
closeSession() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: close the current hibernate session
commit() - Method in interface org.icenigrid.gridsam.core.plugin.Transaction: commit a previously started transaction
compare(Object, Object) - Method in class org.icenigrid.gridsam.core.JobStageComparator: Compares its two arguments for order.
compareTo(Object) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties: Compares this object with the specified object for order.
containsConfiguration(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
containsService(Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
containsService(String, Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
contextDestroyed(ServletContextEvent) - Method in class org.icenigrid.gridsam.webservice.servlet.JobManagerConfigurator: context is destroyed
contextInitialized(ServletContextEvent) - Method in class org.icenigrid.gridsam.webservice.servlet.JobManagerConfigurator: context is initialised
copy(FileObject, FileObject) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: copy the content of a virtual file from pFrom to another virtual file pTo
copyFileToFile(FileObject, FileObject, boolean) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: copy the content of a virtual file from pFrom to another (optionally append the file content to the end of the pTo file) Note.
createFile(FileName) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: Creates a file object.
createJobInstance() - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: create a new job instance.
createJobInstance() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create a new job instance.
createRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry: create the underlying registry.
createRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry: create the underlying registry.
createStandardFileSystemOptions(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: create a standard set of file system options
createStandardFileSystemOptions(GSSCredential) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: create a standard set of file system options

D

DEFAULT_LIFETIME - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: default MyProxy lifetime
DEFAULT_PORT - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: default MyProxy port
DEFAULT_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage: number of retry when the globus gatekeeper is not responding (error code 79)
DOM4JCategory - class org.icenigrid.gridsam.core.plugin.connector.common.DOM4JCategory.: Groovy Category object providing added Groovy operations to DOM4J Node class.
DOM4JCategory() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DOM4JCategory
DONE - Static variable in class org.icenigrid.gridsam.core.JobState: The job has completed successfully
DRMConnector - interface org.icenigrid.gridsam.core.plugin.DRMConnector.: Interface defining the pluggable component in GridSAM responsible for launching a job instance onto a Distributed Resource Management system.
DRMConnectorDescriptor - class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor.: Bean class describing a DRMConnector
DRMConnectorDescriptor(String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: create a DRMConnectorDescriptor that resolves a DRMConnector instance from a name
DRMConnectorDescriptor(DRMConnector, String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: create a DRMConnectorDescriptor that is associate directly to a DRMConnector instance
DRMConnectorManager - interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager.: A DRMConnectorManager defines the interface of a manager to instances of DRMConnector.
DefaultCommandListener - class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener.: Default implementation of CommandListener.
DefaultCommandListener() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener: private constructor
DefaultFileSystemProvider - class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider.: Default FileSystemProvider implementation that resolves the file system using the supplied root URI
DefaultFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider
DefaultInterceptor - class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor.: Default implementation of the Hibernate Interceptor
DefaultInterceptor() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor
DefaultJobContext - class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext.: Default implementation of JobContext
DefaultJobContext(Registry, MutableJobInstance, boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: create a DefaultJobContext
DefaultJobManager - class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager.: Default implementation of the JobManager interface
DefaultJobManager() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: create a DefaultJobManager
DefaultJobManager(String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: create a DefaultJobManager with a configuration resources
DefaultJobManager(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: create a DefaultJobManager with a list of configuration resources
DefaultJobManagerContext - class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.: Default implementation of JobManagerContext
DefaultJobManagerContext(Registry) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: create a DefaultJobManagerContext
DefaultJobManagerContext.StageTask - class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask.: A Quartz Job that executes a DRMConnector
DefaultJobManagerContext.StageTask() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask
DefaultJobManagerMBean - interface org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerMBean.: MBean interface for DefaultJobManager
DefaultJobStage - class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage.: Default implementation of JobStage
DefaultJobStage() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage
DefaultMutableJobInstance - class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance.: Default implementation of MutableJobInstance
DefaultMutableJobInstance() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance
DelegatingDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager.: Implementation of DRMConnectorManager that delegates the functionality to another DRMConnectorManager
DelegatingDRMConnectorManager(DRMConnectorManager) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager: create a DelegatingDRMConnectorManager
DelegatingFileSystemProvider - class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider.: A FileSystemProvider implementation that delegates responsibility to another FileSystemProvider
DelegatingFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider
DoneStage - class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage.: A terminal stage that marks the job as done
DoneStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage
DrmaaDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector.: MultiStageDRMConnector implementation that performs DRMAA submission
DrmaaDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector: default constructor
DrmaaDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager.: DRMConnectorBuilder implementation for the shell-based condor integration
DrmaaDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager
DrmaaStatusStage - class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaStatusStage.: DRMConnector implementation that checks DRMAA job status
DrmaaStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaStatusStage
DrmaaSubmissionStage - class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage.: DRMConnector implementation that submits job through DRMAA
DrmaaSubmissionStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage
DrmaaTerminateStage - class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaTerminateStage.: DRMConnector implementation for performing DRMAA job termination
DrmaaTerminateStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaTerminateStage
deepCopy(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Return a deep copy of the persistent state, stopping at entities and at collections.
delay() - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.SimulatedUser: delay for a period before the next run
deleteCalendar(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
deleteJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
deleteJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: delete a job instance from the store
deleteJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: delete a job instance from the store
destroy() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process: Kills the subprocess.
destroy() - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: the service instance is about to be destroyed
destroy() - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl: the service instance is about to be destroyed
destroy() - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: the service instance is about to be destroyed
disassemble(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum
doCloseCommunicationLink() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: Close the underlaying link used to access the files
doCreateFileSystem(FileName, FileSystemOptions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider: Creates a FileSystem.
doCreateFolder() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Creates this file as a folder.
doDelete() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Deletes the file.
doGetContentSize() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Returns the size of the file content (in bytes).
doGetInputStream() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Creates an input stream to read the file content from.
doGetOutputStream(boolean) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Creates an output stream to write the file content to.
doGetType() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Determines the type of this file.
doListChildren() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Lists the children of this file.
doRename(FileObject) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Renames the file.
doSchedule(DRMConnectorDescriptor) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule an execution of a DRMConnector defined by the descriptor
doSetAttribute(String, Object) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: Sets an attribute of this file.

E

EVENTS - Static variable in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter: all event codes and associated description
EXECUTED - Static variable in class org.icenigrid.gridsam.core.JobState: The job has been executed (i.e.
EXIT_CODE - Static variable in class org.icenigrid.gridsam.core.StandardJobProperties: exit code
end() - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: the test is ended
end() - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: the test is ended
equals(Object) - Method in class org.icenigrid.gridsam.core.JobState: equality check
equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: equality check
equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: Indicates whether some other object is "equal to" this one.
equals(Object, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Compare two instances of the class mapped by this type for persistence "equality".
errorSubmitJob(GridSAMStressTest.SimulatedUser, int, Exception) - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: report error after submitJob is invoked
errorSubmitJob(GridSAMStressTest.SimulatedUser, int, Exception) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: report error after submitJob is invoked
execute(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnector: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailDRMConnector: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage: Launch a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.NullDRMConnector: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage: Launch a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: execute this stage
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaStatusStage: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaTerminateStage: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage: execute a job through this DRMConnector
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage: launch a job
execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusInitStage: execute a job through this DRMConnector
execute(JobExecutionContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask: execute a quartz job.
executeCommand(String, File, Properties) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: execute a system process synchronously.
executeCommand(String, File, Properties, File, File) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: execute a command synchronously.
executeCommand(String, File, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: execute a command synchronously.
executeCommand(String, File, Properties, File, File, File) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell: execute a command synchronously.
executeCommand(String, File, Properties) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a command synchronously.
executeCommand(String, File, Properties, CommandListener) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a command synchronously.
executeCommand(String, File, Properties, File, File) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a command synchronously.
executeCommand(String, File, Properties, File, File, File) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a command synchronously.
executeCommandAsynchronously(String, File, Properties) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, File, File) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, File, File, File) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell: execute a command synchronously.
executeCommandAsynchronously(String, File, Properties) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, CommandListener) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, File, File) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, File, File, File) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: execute a command synchronously.
executeCommandAsynchronously(String, File, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell: execute a system process asynchronously.
executeCommandAsynchronously(String, File, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: execute a system process asynchronously.
exitValue() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process: Returns the exit value for the subprocess.
expandSymbols(String, Location) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

F

FAILED - Static variable in class org.icenigrid.gridsam.core.JobState: The job terminated before completion because of an error, user-triggered cancel, or system-triggered cancel
FileSystemCleanupStage - class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage.: DRMConnector implementation that cleans up the working directory previously created by the ShellInitialisationStage.
FileSystemCleanupStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage
FileSystemInitStage - class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage.: DRMConnector implementation that initialises the working directory using the given shell and exposes a job property KEY_WORKING_DIRECTORY with the value of the working directory for the job.
FileSystemInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage
FileSystemProvider - interface org.icenigrid.gridsam.core.plugin.FileSystemProvider.: Interface for pluggable file system
ForkDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnector.: MultiStageDRMConnector implementation that performs shell based forking
ForkDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnector: default constructor
ForkDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager.: DRMConnectorBuilder implementation for the shell-based condor integration
ForkDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager
ForkStage - class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage.: MultiStageDRMConnector.Stage implementation that forks the application locally as defined in the jsdl:Application element.
ForkStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage
findDirty(Object, Serializable, Object[], Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called from flush().
findJobInstance(String) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: find a job instance using the job identifier
findJobInstance(String) - Method in interface org.icenigrid.gridsam.core.JobManager: find a job instance using the job identifier
findJobInstance(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: find a job instance using the job identifier
findJobInstancesByState(JobState) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: find all known JobInstance which has exactly the given state
findJobInstancesByState(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: find all known JobInstance which has exactly the given state
findJobInstancesWithProperties(Map) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: find all known JobInstances which satisfy the query string
findJobInstancesWithProperties(Map) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: find all known JobInstances which satisfy the query string
flush() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore: flush all updates to persistent storage
flush() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: flush all updates to persistent storage
forkJob(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage: fork the job using the attached Shell
formatXSDDateTimeString(Calendar) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: format a date into a XSD dateTime compatible date string using the default time zone
formatXSDDateTimeString(Calendar, TimeZone) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: format a date into a XSD dateTime compatible date string using the default time zone

G

GRAMStatusStage - class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage.: A DRMConnector for retrieving the job status from the globus gatekeeper
GRAMStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage
GRAMSubmissionStage - class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage.: DRMConnector implementation that submit the application to a GRAM job manager
To submit a job to a Globus resource, you need to have - a valid X509 proxy Not all the JSDL tags are dealt with when submitting a job to a Globus resource.
GRAMSubmissionStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage
GRAMTerminateStage - class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMTerminateStage.: DRMConnector for terminating a GRAM job
GRAMTerminateStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMTerminateStage
GRIDSAM_NAMESPACE - Static variable in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: the GridSAM namespace as a org.dom4j.Namespace object
GRIDSAM_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: the GridSAM namespace string
GSIFTPFileObject - class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject.: Class representing a GSIFTP file
GSIFTPFileObject(FileName, GSIFTPFileSystem, FileName) - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: create a GSIFTP file object
GSIFTPFileProvider - class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider.: Ths VFS provider class for Grid FTP
GSIFTPFileProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider
GSIFTPFileSystem - class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem.: A GSIFTP file system
GSIFTPFileSystem(FileName, FileSystemOptions) - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: default constructor
GSIFTPFileSystemConfigBuilder - class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder.: GSIFTPFileSystem configurer
GlobusCredentialSupport - class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport.: Globus credential support class (e.g.
GlobusCredentialSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport
GlobusDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector.: MultiStageDRMConnector implementation that provides GRAM submission functionality
GlobusDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector: create a MultiStageDRMConnector
GlobusDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager.: DRMConnectorManager implementation for GT2.4.3 integration
GlobusDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager
GlobusInitStage - class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusInitStage.: DRMConnector Stage that initialise the globus environment for staging and submission
GlobusInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusInitStage
GridSAMClientSupport - class org.icenigrid.gridsam.client.common.GridSAMClientSupport.: Support class for client-access to GridSAM web service
GridSAMClientSupport(String) - Constructor for class org.icenigrid.gridsam.client.common.GridSAMClientSupport: create a GridSAMClientSupport that can be used to invoke a GridSAM service
GridSAMFTPServer - class org.icenigrid.gridsam.client.cli.GridSAMFTPServer.: Command-line application for starting up an FTP server on the localhost for serving files
GridSAMFTPServer() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMFTPServer
GridSAMFileTransfer - class org.icenigrid.gridsam.client.cli.GridSAMFileTransfer.: Command-line application for transferring files
GridSAMFileTransfer() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMFileTransfer
GridSAMGroovyBootstrap - class org.icenigrid.gridsam.client.cli.GridSAMGroovyBootstrap.: Command-line application that bootstraps a groovy script making available the gridsam classpath
GridSAMGroovyBootstrap() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMGroovyBootstrap
GridSAMService - interface org.icenigrid.gridsam.client.api.GridSAMService.
GridSAMService - class org.icenigrid.gridsam.webservice.axis.GridSAMService.: Implementation of GridSAM web webservice that lives in an Apache Axis container (e.g.
GridSAMService() - Constructor for class org.icenigrid.gridsam.webservice.axis.GridSAMService
GridSAMServiceAxisImpl - class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl.: Implementation of GridSAM web webservice that lives in the OMII Apache Axis container.
GridSAMServiceAxisImpl() - Constructor for class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl
GridSAMStatus - class org.icenigrid.gridsam.client.cli.GridSAMStatus.: Command-line application for querying GridSAM job status
GridSAMStatus() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMStatus: private constructor
GridSAMStressTest - class org.icenigrid.gridsam.client.cli.GridSAMStressTest.: GridSAM Stress Test Client
GridSAMStressTest() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMStressTest
GridSAMStressTest.Reporter - interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter.: interface for receiving event from user
GridSAMStressTest.SimulatedUser - class org.icenigrid.gridsam.client.cli.GridSAMStressTest.SimulatedUser.: class representing a simulated user
GridSAMStressTest.SimulatedUser(JobManager, int, GridSAMStressTest.Reporter, String, long) - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMStressTest.SimulatedUser: create a simulated user
GridSAMStressTest.XMLReporter - class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter.: a reporter that generates a XML report
GridSAMStressTest.XMLReporter(Writer) - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: create an XMLReporter
GridSAMSubmit - class org.icenigrid.gridsam.client.cli.GridSAMSubmit.: Command-line application for submitting GridSAM job
GridSAMSubmit() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMSubmit
GridSAMSupport - class org.icenigrid.gridsam.webservice.support.GridSAMSupport.: Support class for GridSAM web service
GridSAMSupport() - Constructor for class org.icenigrid.gridsam.webservice.support.GridSAMSupport
GridSAMTerminate - class org.icenigrid.gridsam.client.cli.GridSAMTerminate.: Command-line application for terminating GridSAM job
GridSAMTerminate() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMTerminate: private constructor
GridSAMVersion - class org.icenigrid.gridsam.client.cli.GridSAMVersion.: Command line application for retrieving the version of GridSAM
GridSAMVersion() - Constructor for class org.icenigrid.gridsam.client.cli.GridSAMVersion
GroovyDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector.: A DRMConnector that uses a groovy script to perform submission
GroovyDRMConnector(List) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: Constructor allowing a set of properties to be passed to the groovy script as implicit variables
GroovyDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: Default constructor
getCalendar(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getCalendarNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getCapabilities() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider: Get the filesystem capabilities.
These are the same as on the filesystem, but available before the first filesystem was instanciated.
getCondorEventListeners() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: get the condor event listeners
getCondorLogFile() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: get the condor log file
getCondorRmCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: get the condor_rm command
getCondorSubmitCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: get the full path of the condor_submit command used by DRMConnector
getConfigClass() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder: the config class
getConfiguration(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
getContext() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getCredential(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: get a globus credential from the job context
getCurrentlyExecutingJobs() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getDRMConnector() - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: get the named DRMConnector from the context
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: get the named DRMConnector from the context
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager: return a DRMConnector instance based on the configuration
getDRMConnectorBuilder() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: obtain the DRMConnectorBuilder instance from the configuration
getDate() - Method in interface org.icenigrid.gridsam.core.JobStage: get the date when this stage is entered
getDate() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: get the date when this stage is entered
getDescription() - Method in interface org.icenigrid.gridsam.core.JobStage: get the description associated with this stage
getDescription() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: get the description associated with this stage
getDrmaaSession() - Static method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager: get the singleton Drmaa Session
getEntity(String, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Get a fully loaded entity instance that is cached externally
getEntityName(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Get the entity name for a persistent or transient instance
getError() - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener: get the accumulated error output
getEventCodes() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter: get the set event codes interested by this event listener
getEventCodes() - Method in interface org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventListener: get the set event codes interested by this event listener
getFileClient() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: get File Client
getFileResource() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem: get File Resource
getFileSystem(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.FileSystemProvider: get the file system associated with the job
getFileSystem() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: get the file system associated with the job context
getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailFileSystemProvider: get the file system associated with the job
getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider: get the file system associated with the job
getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider: get the file system associated with the job
getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider: get the file system associated with the job
getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: get the file system associated with the job
getFileSystem() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell: get the root of the filesystem presented by this shell
getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell: get the root of the filesystem presented by this shell
getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: get the root of the filesystem presented by this shell
getFileSystemManager() - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport: get the FileSystemManager singleton
getFileSystemOptions(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider: get the file system options for the job.
getGSIFTPFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: get the GSIFTPFileSystem this file is associated with
getGSSCredential(FileSystemOptions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder: get the access credential
getGlobalJobListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getGlobalTriggerListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getGroovyScriptEngine() - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: get the shared GroovyScriptEngine
getHost() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
getID() - Method in interface org.icenigrid.gridsam.core.JobInstance: the job identifier
getID() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: the job identifier
getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener: get the singleton instance
getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener: get the singleton instance
getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder: get the singleton instance
getJSDL() - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.SimulatedUser: get the JSDL to be submitted
getJobControlSOAPPort() - Method in interface org.icenigrid.gridsam.client.api.GridSAMService
getJobDescription() - Method in interface org.icenigrid.gridsam.core.JobInstance: get the Job description document as a string
getJobDescription() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get the Job description document as a string
getJobDescriptionDocument() - Method in interface org.icenigrid.gridsam.core.JobInstance: get the job description as a DOM4J document object
getJobDescriptionDocument() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get the job description as a DOM4J document object
getJobDetail(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getJobGroupNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getJobID() - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: get the job id this DRMConnector is schedule to perform on
getJobInstance() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: the job instance associated with this job context
getJobInstance(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: create or retrieve a job instance with the given ID
getJobInstance() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: the job instance to be launched through the DRMConnector
getJobInstance(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create or retrieve a job instance with the given ID
getJobInstanceStore() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: get the job instance store
getJobInstanceStore() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: obtain the JobInstanceStore instance from the configuration
getJobInstanceStore() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: get the job instance store
getJobListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getJobListenerNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getJobManager() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage
getJobManager() - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: retrieve a instance orf JobManager associated with this service
getJobManager() - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: retrieve a instance orf JobManager associated with this service
getJobManager(ServletContext) - Static method in class org.icenigrid.gridsam.webservice.servlet.JobManagerConfigurator: retrieve the JobManager instance from the ServletContext
getJobManagerContext() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager: get the job manager context associated with this DRMConnectorManager
getJobMonitoringSOAPPort() - Method in interface org.icenigrid.gridsam.client.api.GridSAMService
getJobNames(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getJobStages() - Method in interface org.icenigrid.gridsam.core.JobInstance: get the job status history associated with this job instance
getJobStages() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get the job status history associated with this job instance
getJobStatus(SOAPElement) - Method in interface org.icenigrid.gridsam.client.api.JobMonitoringPortType
getJobStatus(SOAPElement) - Method in class org.icenigrid.gridsam.client.api.JobMonitoringPortType_Impl
getJobStatus(String) - Method in class org.icenigrid.gridsam.client.common.GridSAMClientSupport: get the JobStatus document for the given job
getJobStatus(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: retrieve the job status
getJobStatus(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl: retrieve the job status
getJobStatus(Document) - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: retrieve the job status
getJobSubmissionSOAPPort() - Method in interface org.icenigrid.gridsam.client.api.GridSAMService
getKeyfile() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
getLastKnownStage() - Method in interface org.icenigrid.gridsam.core.JobInstance: get the last known job stage
getLastKnownStage() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get the last known job stage
getLocale() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
getLog() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: get a Log associated with this job.
getLog() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: get a Logger associated with this job
getMBeanName() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: create an MBean ObjectName for this object
getMaximumRetryCount() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage: get the retry count
getMetaData() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector: get the wait between monitoring cycle
getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector: get the wait between monitoring cycle
getOutput() - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener: get the accumulated standard output
getParameters() - Method in class org.icenigrid.gridsam.client.api.AuthorisationFaultMessage
getParameters() - Method in class org.icenigrid.gridsam.client.api.JobMonitoringFaultMessage
getParameters() - Method in class org.icenigrid.gridsam.client.api.JobSubmissionFaultMessage
getParameters() - Method in class org.icenigrid.gridsam.client.api.JobTerminationFaultMessage
getParameters() - Method in class org.icenigrid.gridsam.client.api.UnknownJobFaultMessage
getPassphrase() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
getPassword(String) - Static method in class org.icenigrid.gridsam.client.cli.PasswordInput
getPassword() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig
getPasswordAuthentication() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
getPausedTriggerGroups() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getPlatformMBeanServer() - Static method in class org.icenigrid.gridsam.core.jmx.JMXSupport: get the platform MBean server
getPort() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
getPosixShellPath() - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell: get the path to the posix shell executable
getPossibleNextState() - Method in class org.icenigrid.gridsam.core.JobState: get a list of JobState this state can advance to
getPreference() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties: the preference ranking associated with the properties.
getProperties() - Method in interface org.icenigrid.gridsam.core.JobInstance: get the properties associated with the job
getProperties() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: get properties
getProperties() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get the properties associated with the job
getProvider() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider: get the delegate
getPublicKeyAuthentication() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
getQueriedJobs() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: get the number of job status queries within the job manager uptime
getQueriedJobs() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: get the number of job status queries within the job manager uptime
getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: get the mutable object registry associated with this job manager
getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: get the object registry to locate configured components of the GridSAM system
getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry: get the registry managed by this registry
getRootFileSystemURI() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider: get the root file system URI
getScheduler() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: obtain the Scheduler instance from the configuration
getSchedulerInstanceId() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getSchedulerListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getSchedulerName() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getScriptResource() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: get script location
getService(String, Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
getService(Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
getServletEndpointContext() - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: get the associated ServletEndpointContext
getSession() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: retrieve a hibernate session for the current thread
getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: get the shell to use to for launching job
getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage: get the shell to use to for launching job
getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider: get the associated shell
getSpoolDirectory() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage: get the spooling directory
getStandardOptions() - Static method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: get the set of standard command-line options
getState() - Method in interface org.icenigrid.gridsam.core.JobStage: get the state
getState() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: get the state
getStatistics() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: get statistics
getStatisticsLog() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get a log for outputting job specific statistics
getSubmittedJobIDs() - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: get the list of submitted jobs
getSubmittedJobs() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: get the number of submitted jobs within the job manager uptime
getSubmittedJobs() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: get the number of submitted jobs within the job manager uptime
getTailCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: get the condor log file
getTargetEndpointAddress() - Method in class org.icenigrid.gridsam.client.common.GridSAMClientSupport: get the target endpoint address of the service
getTimestampFromXSDDateTime(String) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: create a Timestamp object from a xsd datetime string
getTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggerGroupNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggerListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggerListenerNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggerNames(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggerState(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getTriggersOfJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
getUpTime() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: get the uptime of the JobManager
getUpTime() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: get the uptime of the JobManager
getUser() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
getVersion() - Static method in class org.icenigrid.gridsam.client.cli.GridSAMVersion: retrieve a version string
getVersion() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: get version
getVersion() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: get version

H

HibernateJobInstanceStore - class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore.: JobInstanceStore implementation that uses Hibernate to persist java objects
HibernateJobInstanceStore(String) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create a new HibernatePersistenceStore with a transient database
HibernateJobInstanceStore(List) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create a HibernatePersistenceStore with a list of InlineProperties that is aggregated to become a single Properties.
HibernateJobInstanceStore(Properties) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create a new HibernatePersistenceStore
HibernateJobInstanceStore(Configuration) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: create a new HibernatePersistenceStore
HibernateJobStateEnum - class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum.: Hibernate type mapper for JobState class
HibernateJobStateEnum() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum
HibernatePersistenceStore - class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore.: PersistenceStore implementation that uses Hibernate to persist java objects
HibernatePersistenceStore(String) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: create a new HibernatePersistenceStore with a transient database
HibernatePersistenceStore(List) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: create a HibernatePersistenceStore with a list of InlineProperties that is aggregated to become a single Properties.
HibernatePersistenceStore(Properties) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: create a new HibernatePersistenceStore
HibernatePersistenceStore(Configuration) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: create a new HibernatePersistenceStore
hasShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: test if a shell has been associated with this stage
hasShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage: test if a shell has been associated with this stage
hashCode() - Method in class org.icenigrid.gridsam.core.JobState: get the hashcode of this object
hashCode() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: get hashcode value
hashCode() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: Returns a hash code value for the object.
hashCode() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: Returns a hash code value for the object.
hashCode(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

I

InlineProperties - class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties.: Extension of Properties that allows a string that follows the properties file format to be added to the Properties object.
InlineProperties() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties
init(Object) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: initialise the service
init(Object) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl: initialise the service
init(Object) - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: initialise the service
initialise(String) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: initialise this ClientSideJobManager
initialise(JobManagerContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager: called by the Job Manager to initialise this DRMConnectorBuilder
initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager: called by the Job Manager to initialise this DRMConnectorBuilder
initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: called by the Job Manager to initialise this DRMConnectorBuilder
initialise(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: reinitialise the machinery
initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager: called by the Job Manager to initialise this DRMConnectorBuilder
initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager: called by the Job Manager to initialise this DRMConnectorBuilder
initialise(Scheduler) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate: initialise the Scheduler with the delegatee
instantiate(String, EntityMode, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Instantiate the entity class.
instantiate(String, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Instantiate the entity class.
interrupt() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask: Called by the Scheduler when a user interrupts the Job.
interrupt(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
isCopyToSpool() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: should the binary be copy to the condor spool directory if the executable is staged in
isInStage(JobState) - Method in interface org.icenigrid.gridsam.core.JobInstance: test whether the job is currently in the given state
isInStage(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: test whether the job is currently in the given state
isInterrupted() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: test whether this context has been interrupted
isInterrupted() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: test whether this context has been interrupted
isMutable() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Are objects of this type mutable?
isPaused() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
isRecovering() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: test whether this context is recovering from a crash
isRecovering() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: test whether this context is recovering from a crash
isShutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
isSuspended() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: flag to indicate whether the JobManager is suspended
isSuspended() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: flag to indicate whether the JobManager is suspended
isTerminal() - Method in class org.icenigrid.gridsam.core.JobState: test whether this state is a terminal state
isTransient(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called to distinguish between transient and detached entities.

J

JMXSupport - class org.icenigrid.gridsam.core.jmx.JMXSupport.: Created by IntelliJ IDEA.
JMXSupport() - Constructor for class org.icenigrid.gridsam.core.jmx.JMXSupport
JOBMANAGER_CONFIG_RESOURCE - Static variable in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: default resource containing the job manager configuration
JSDLSupport - class org.icenigrid.gridsam.core.jsdl.JSDLSupport.: Support class for handling JSDL document support added for specifying MyProxy Attribs in jsdl document.
JSDLSupport() - Constructor for class org.icenigrid.gridsam.core.jsdl.JSDLSupport
JSDL_MYPROXY_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: resource location to locate the myproxy schema
JSDL_NAMESPACE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: the JSDL namespace as a org.dom4j.Namespace object
JSDL_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: the JSDL namespace string
JSDL_POSIX_NAMESPACE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: The JSDL posix namespace as a Namespace object
JSDL_POSIX_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: the JSDL POSIX namespace string
JSDL_POSIX_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: resource location to locate the posix schema
JSDL_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: resource location to locate the JSDL schema
JobContext - interface org.icenigrid.gridsam.core.plugin.JobContext.: Interface defining a context object being passed through the launching pipeline providing useful information about the job and the environment to be launched.
JobContext.ThrowableRunnable - interface org.icenigrid.gridsam.core.plugin.JobContext.ThrowableRunnable.: A runnable-like interface that allows exception to be caught
JobControlPortType - interface org.icenigrid.gridsam.client.api.JobControlPortType.
JobControlPortType_Impl - class org.icenigrid.gridsam.client.api.JobControlPortType_Impl.
JobControlPortType_Impl() - Constructor for class org.icenigrid.gridsam.client.api.JobControlPortType_Impl
JobIdentificationStage - class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage.: DRMConnector for inserting the JSDL JobIdentification data into the job instance as properties
JobIdentificationStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage
JobInstance - interface org.icenigrid.gridsam.core.JobInstance.: Interface representing a job instance in the GridSAM JobManager API
JobInstanceChangeListener - interface org.icenigrid.gridsam.core.JobInstanceChangeListener.: Listener interface to receive job change event
JobInstanceStore - interface org.icenigrid.gridsam.core.plugin.JobInstanceStore.: Manager interface of JobInstance storage.
JobManager - interface org.icenigrid.gridsam.core.JobManager.: Interface representing the entry-point to the GridSAM job submission and monitoring system.
JobManagerBuilder - interface org.icenigrid.gridsam.core.JobManagerBuilder.: Builder interface for JobManager
JobManagerConfigurator - class org.icenigrid.gridsam.webservice.servlet.JobManagerConfigurator.: JobManagerConfigurator class is a ServletContextListener that configures and manages a single instance of JobManager for the webapp
JobManagerConfigurator() - Constructor for class org.icenigrid.gridsam.webservice.servlet.JobManagerConfigurator
JobManagerContext - interface org.icenigrid.gridsam.core.plugin.JobManagerContext.: Context interface for DRMConnector to take advantage of services provided by the JobManager
JobManagerException - exception org.icenigrid.gridsam.core.JobManagerException.: Exception thrown when there is a general error with the job manager configuration
JobManagerException() - Constructor for class org.icenigrid.gridsam.core.JobManagerException: Constructs a new exception with null as its detail message.
JobManagerException(String) - Constructor for class org.icenigrid.gridsam.core.JobManagerException: Constructs a new exception with the specified detail message.
JobManagerException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.JobManagerException: Constructs a new exception with the specified detail message and cause.
JobManagerException(Throwable) - Constructor for class org.icenigrid.gridsam.core.JobManagerException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
JobManagerMBean - interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean.: MBean interface for all JobManager derivation
JobMonitoringFaultMessage - exception org.icenigrid.gridsam.client.api.JobMonitoringFaultMessage.
JobMonitoringFaultMessage(SOAPElement) - Constructor for class org.icenigrid.gridsam.client.api.JobMonitoringFaultMessage
JobMonitoringPortType - interface org.icenigrid.gridsam.client.api.JobMonitoringPortType.
JobMonitoringPortType_Impl - class org.icenigrid.gridsam.client.api.JobMonitoringPortType_Impl.
JobMonitoringPortType_Impl() - Constructor for class org.icenigrid.gridsam.client.api.JobMonitoringPortType_Impl
JobStage - interface org.icenigrid.gridsam.core.JobStage.: Interface representing a stage of a submitted job
JobStageComparator - class org.icenigrid.gridsam.core.JobStageComparator.: User: wwhl Date: 15-Sep-2004 Time: 11:07:22
JobStageComparator() - Constructor for class org.icenigrid.gridsam.core.JobStageComparator
JobState - class org.icenigrid.gridsam.core.JobState.: Enumeration class representing Job States
JobSubmissionFaultMessage - exception org.icenigrid.gridsam.client.api.JobSubmissionFaultMessage.
JobSubmissionFaultMessage(SOAPElement) - Constructor for class org.icenigrid.gridsam.client.api.JobSubmissionFaultMessage
JobSubmissionPortType - interface org.icenigrid.gridsam.client.api.JobSubmissionPortType.
JobSubmissionPortType_Impl - class org.icenigrid.gridsam.client.api.JobSubmissionPortType_Impl.
JobSubmissionPortType_Impl() - Constructor for class org.icenigrid.gridsam.client.api.JobSubmissionPortType_Impl
JobTerminationFaultMessage - exception org.icenigrid.gridsam.client.api.JobTerminationFaultMessage.
JobTerminationFaultMessage(SOAPElement) - Constructor for class org.icenigrid.gridsam.client.api.JobTerminationFaultMessage

L

LegacyDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager.: DRMConnectorBuilder implementation to provide backward compatibility of DRMConnector configuration that makes use of the "gridsam.DRMConnector" name to obtain DRMConnector instance
LegacyDRMConnectorManager(String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager: create a LegacyDRMConnectorBuilder with the given name as the name to lookup DRMConnector instance
LocalShell - class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell.: A Shell implementation that forks command locally
LocalShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell: default constructor
loadCredential(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: load the MyProxy credential as detailed in the JSDL document
loadCredential(String, String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: load the MyProxy credential as detailed in the JSDL document
loadCredential(String, int, String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: load the MyProxy credential as detailed in the JSDL document
loadCredential(String, int, String, String, String, int) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: load the MyProxy credential as detailed in the JSDL document

M

MYPROXY_NAMESPACE - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: The myproxy extension namespace as a Namespace object
MYPROXY_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: JSDL MyProxy extension namespace string
ManagedRegistry - class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry.: Extension of a Hivemind Registry that provides automatically shutdown capability.
ManagedRegistry() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry: create a ManagedRegistry.
ManagedRegistry(boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry: create a ManagedRegistry with optional auto-shutdown
MultiStageDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.: A DRMConnector that represents a sequential multi-stage process with which the individual stages can be scheduled separately
MultiStageDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: create a MultiStageDRMConnector
This task will progress if the job is not in any terminal state
MultiStageDRMConnector(String, MultiStageDRMConnector.ProgressCriteria) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: create a MultiStageDRMConnector
MultiStageDRMConnector(DRMConnector, MultiStageDRMConnector.ProgressCriteria) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: create a MultiStageDRMConnector
MultiStageDRMConnector.ProgressCriteria - interface org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressCriteria.: interface defining a criteria object to define whether the pipeline should progress forward or be aborted.
MultiStageDRMConnector.ProgressInstruction - class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction.: progress constants
MultiStageDRMConnector.ProgressInstruction(String) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: protected constructor
MutableJobInstance - interface org.icenigrid.gridsam.core.MutableJobInstance.: Interface extending JobInstance providing mutable access to job status and other information
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMFTPServer: CLI application main method
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMFileTransfer: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMGroovyBootstrap: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMStatus: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMSubmit: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMTerminate: application entry point
main(String[]) - Static method in class org.icenigrid.gridsam.client.cli.GridSAMVersion: main application
mergeJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: merge a job instance object
mergeJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: merge a job instance object

N

NON_TERMINAL_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: criteria implementation that will progress if the job is NOT in a terminal state
NullCommandListener - class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener.: A CommandListener implementation that ignores all output stream events
NullDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.common.NullDRMConnector.: DRMConnector implementation that does nothing
NullDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.NullDRMConnector
NullServiceAxisImpl - class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl.: Implementation of GridSAM web webservice that lives in an Apache Axis container (e.g.
NullServiceAxisImpl() - Constructor for class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl
notifyChange(JobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: notify change to all listeners
nullSafeGet(ResultSet, String[], Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Retrieve an instance of the mapped class from a JDBC resultset.
nullSafeSet(PreparedStatement, Object, int) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Write an instance of the mapped class to a prepared statement.

O

oConfigResources - Variable in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: configuration resources
oHibernateSession - Variable in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: the hibernate session thread-local
oJobManager - Variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage: The job manager on which to launch the job
oScheduler - Variable in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate: the delegate instance
oWriter - Variable in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter
onChange(JobInstance) - Method in interface org.icenigrid.gridsam.core.JobInstanceChangeListener: notify the state of the JobInstance has changed
onChange(JobInstance) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: notify the state of the JobInstance has changed
onDelete(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called before an object is deleted.
onErrorStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener: called when error stream data is available
onErrorStreamData(String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.CommandListener: called when error stream data is available
onErrorStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener: called when error stream data is available
onErrorStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener: called when error stream data is available
onEvent(MutableJobInstance, String, String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter: condor event received for a particular job
onEvent(MutableJobInstance, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventListener: condor event received for a particular job
onFlushDirty(Object, Serializable, Object[], Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called when an object is detected to be dirty, during a flush.
onLoad(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called just before an object is initialized.
onOutputStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener: called when output stream data is available
onOutputStreamData(String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.CommandListener: called when output stream data is available
onOutputStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener: called when output stream data is available
onOutputStreamData(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener: called when output stream data is available
onSave(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called before an object is saved.
onStreamClosed() - Method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener: called when the application streams are closed.
org.icenigrid.gridsam.client.api - package org.icenigrid.gridsam.client.api
org.icenigrid.gridsam.client.cli - package org.icenigrid.gridsam.client.cli
org.icenigrid.gridsam.client.common - package org.icenigrid.gridsam.client.common
org.icenigrid.gridsam.core - package org.icenigrid.gridsam.core
org.icenigrid.gridsam.core.jmx - package org.icenigrid.gridsam.core.jmx
org.icenigrid.gridsam.core.jsdl - package org.icenigrid.gridsam.core.jsdl
org.icenigrid.gridsam.core.plugin - package org.icenigrid.gridsam.core.plugin
org.icenigrid.gridsam.core.plugin.connector.common - package org.icenigrid.gridsam.core.plugin.connector.common
org.icenigrid.gridsam.core.plugin.connector.condor - package org.icenigrid.gridsam.core.plugin.connector.condor
org.icenigrid.gridsam.core.plugin.connector.data - package org.icenigrid.gridsam.core.plugin.connector.data
org.icenigrid.gridsam.core.plugin.connector.drmaa - package org.icenigrid.gridsam.core.plugin.connector.drmaa
org.icenigrid.gridsam.core.plugin.connector.fork - package org.icenigrid.gridsam.core.plugin.connector.fork
org.icenigrid.gridsam.core.plugin.connector.globus - package org.icenigrid.gridsam.core.plugin.connector.globus
org.icenigrid.gridsam.core.plugin.manager - package org.icenigrid.gridsam.core.plugin.manager
org.icenigrid.gridsam.core.plugin.persistence.common - package org.icenigrid.gridsam.core.plugin.persistence.common
org.icenigrid.gridsam.core.plugin.persistence.hibernate - package org.icenigrid.gridsam.core.plugin.persistence.hibernate
org.icenigrid.gridsam.core.plugin.scheduler - package org.icenigrid.gridsam.core.plugin.scheduler
org.icenigrid.gridsam.core.plugin.shell - package org.icenigrid.gridsam.core.plugin.shell
org.icenigrid.gridsam.core.plugin.shell.local - package org.icenigrid.gridsam.core.plugin.shell.local
org.icenigrid.gridsam.core.plugin.shell.ssh - package org.icenigrid.gridsam.core.plugin.shell.ssh
org.icenigrid.gridsam.core.plugin.vfs.gsiftp - package org.icenigrid.gridsam.core.plugin.vfs.gsiftp
org.icenigrid.gridsam.webservice.axis - package org.icenigrid.gridsam.webservice.axis
org.icenigrid.gridsam.webservice.servlet - package org.icenigrid.gridsam.webservice.servlet
org.icenigrid.gridsam.webservice.support - package org.icenigrid.gridsam.webservice.support

P

PENDING - Static variable in class org.icenigrid.gridsam.core.JobState: The job is waiting for resource to become available in order to run
POSIXShell - class org.icenigrid.gridsam.core.plugin.shell.POSIXShell.: Class representing a POSIX compliant shell.
POSIXShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.POSIXShell
PROPERTYKEY_CREDENTIAL - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: the globus credential
PasswordAuthenticationConfig - class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig.: Configuration bean for
PasswordAuthenticationConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig
PasswordInput - class org.icenigrid.gridsam.client.cli.PasswordInput.: Utility class for masking the input stream.
PasswordInput() - Constructor for class org.icenigrid.gridsam.client.cli.PasswordInput
PersistenceException - exception org.icenigrid.gridsam.core.plugin.PersistenceException.: Exception thrown by the JobInstanceStore when a JobInstance cannot be persisted
PersistenceException() - Constructor for class org.icenigrid.gridsam.core.plugin.PersistenceException: Constructs a new exception with null as its detail message.
PersistenceException(String) - Constructor for class org.icenigrid.gridsam.core.plugin.PersistenceException: Constructs a new exception with the specified detail message.
PersistenceException(Throwable) - Constructor for class org.icenigrid.gridsam.core.plugin.PersistenceException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
PersistenceException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.plugin.PersistenceException: Constructs a new exception with the specified detail message and cause.
PersistenceStore - interface org.icenigrid.gridsam.core.plugin.PersistenceStore.: Interface defining a storage of persistent objects
Process - interface org.icenigrid.gridsam.core.plugin.shell.Process.: Interface defining a handle to a running command or process
PublicKeyAuthenticationConfig - class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig.: Configuration bean for
PublicKeyAuthenticationConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
parse(String) - Static method in class org.icenigrid.gridsam.core.JobState: parse a state value into a JobState object
parseUri(String) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider: parse the URI
pause() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pauseAll() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pauseJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pauseJobGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pauseTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pauseTriggerGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
pipeStream(InputStream, int, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: pipe the input of a stream to the output
populateJobInstance(Document, DefaultMutableJobInstance) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: create a MutableJobInstance object from a JobStatus document
populatePermissions(String, Permissions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject: populate a Permissions object according to the permission string
postFlush(Iterator) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called after a flush that actually ends in execution of the SQL statements required to synchronize in-memory state with the database.
postJobTerminal(JobInstance) - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: a job is marked as terminal
postJobTerminal(JobInstance) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: a job is marked as terminal
postSubmitJob(GridSAMStressTest.SimulatedUser, int, String) - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: report after submitJob is invoked
postSubmitJob(GridSAMStressTest.SimulatedUser, int, String) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: report after submitJob is invoked
preFlush(Iterator) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor: Called before a flush
preSubmitJob(GridSAMStressTest.SimulatedUser, int) - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: report before submitJob is invoked
preSubmitJob(GridSAMStressTest.SimulatedUser, int) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: report before submitJob is invoked
progress(JobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressCriteria: test whether the pipeline should progress to the next stage

Q

QNAME_SOAP_FAULTCODE_SERVER - Static variable in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: the qualified name of the SOAP fault code

R

ResourceRegistry - class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry.: A ManagedRegistry that loads object specified by the hivemind configuration loaded as classpath resources.
ResourceRegistry(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry: create a ResourceRegistry that supports auto shutdown
ResourceRegistry(String[], boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry: create a ResourceRegistry
reconfigure(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: reconfigure the Job Manager
reconfigure(String) - Method in interface org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerMBean: reconfigure the Job Manager
registerChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: register a listener to listen to change to job
registerChangeListener(String, JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.JobManager: register a listener to listen to change to job
registerChangeListener(JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: register a listener to listen to change to JobInstances
registerChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: register a listener to listen to change to job
registerChangeListener(JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: register a listener to listen to change events of JobInstance
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: handle shutdown
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager: handle shutdown
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager: handle shutdown
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: the registry is closing down the store
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: the registry is closing down the store
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate: notified by Hivemind that the registry is being shutdown.
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell: The registry is notifying of shutdown
registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: The registry is notifying of shutdown
removeCondorEventListener(CondorEventListener) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: remove a condor event listener
removeGlobalJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
removeGlobalTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
removeJobListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
removeSchedulerListener(SchedulerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
removeTriggerListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
replace(Object, Object, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum
rescheduleJob(String, String, Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
resolveDRMConnector(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: resolve the DRMConnector instance from the description
resolveTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: get the trigger associated with this DRMConnector
resumeAll() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
resumeJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
resumeJobGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
resumeTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
resumeTriggerGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
returnedClass() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: The class returned by nullSafeGet().
revise(Configuration) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: revise the configuration before the hibernate session builder is created
revise(Configuration) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore: revise the configuration before the hibernate session builder is created
rollback() - Method in interface org.icenigrid.gridsam.core.plugin.Transaction: rollback a previously started transaction
run(String[], PrintStream, PrintStream) - Method in class org.icenigrid.gridsam.client.cli.GridSAMFileTransfer: run the command-line application
run(String[], PrintStream, PrintStream) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStatus: run the command-line application
run() - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.SimulatedUser: When an object implementing interface Runnable is used to create a thread, starting the thread causes the object's run method to be called in that separately executing thread.
run(String[], PrintStream, PrintStream) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest: run the command-line application
run(String[], PrintStream, PrintStream) - Method in class org.icenigrid.gridsam.client.cli.GridSAMSubmit: run the command-line application
run(String[], PrintStream, PrintStream) - Method in class org.icenigrid.gridsam.client.cli.GridSAMTerminate: run the command-line application
run() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext.ThrowableRunnable: When an object implementing interface ThrowableRunnable is used to create a thread, starting the thread causes the object's run method to be called in that separately executing thread.
run() - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.PipeRunnable
runInterruptable(Runnable) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: run a block of code (i.e.
runInterruptable(JobContext.ThrowableRunnable) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: run a block of code (i.e.
runInterruptable(JobContext.ThrowableRunnable) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: run a block of code (i.e.
runInterruptable(Runnable) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: run a block of code (i.e.

S

SKIP - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction: skip this task and move on to the next
SSHShell - class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell.: Shell implementation that uses SSH to execute command locally or remotely
SSHShell(List) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: create a SSHShell with the given configuration bean
SSHShell(ServerConfig) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: create a SSHShell with the given configuration bean
SSHShell(String, int, String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: create a SSHShell using username/password authentication
SSHShell(String, int, String, String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell: create a SSHShell using a PKI authentication
STAGED_IN - Static variable in class org.icenigrid.gridsam.core.JobState: The job's data have been staged into the job execution environment
STAGED_OUT - Static variable in class org.icenigrid.gridsam.core.JobState: The job's data have been staged out from the job execution environment
STAGING_IN - Static variable in class org.icenigrid.gridsam.core.JobState: The job's data are staging into the job execution environment
STAGING_OUT - Static variable in class org.icenigrid.gridsam.core.JobState: The job's data are staging out from the job execution environment
STDERR - Static variable in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: id for standard error stream
STDOUT - Static variable in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell: id for standard output stream
SchedulerDelegate - class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate.: A Quartz Scheduler implementation that delegates all calls to the Scheduler interface to another Scheduler instance.
SchedulerDelegate(Scheduler) - Constructor for class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate: delegate all calls to this Scheduler instance to the supplied delegatee
SchedulerDelegate(List) - Constructor for class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate: create a SchedulerDelegate with a properties object that can be used to construct an internal Quartz Scheduler instance
ServerConfig - class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig.: Configuration bean for element
ServerConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
Shell - interface org.icenigrid.gridsam.core.plugin.shell.Shell.: Interface defining a shell within which commands can be run
ShellBasedCondorDRMConnector - class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnector.: MultiStageDRMConnector implementation that performs shell based forking
ShellBasedCondorDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnector: create a MultiStageDRMConnector
This task will progress if the job is not in any terminal state
ShellBasedCondorDRMConnectorManager - class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager.: DRMConnectorManager implementation for the shell-based condor integration
ShellBasedCondorDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: default constructor
ShellBasedCondorSubmitStage - class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage.: MultiStageDRMConnector.Stage implementation for performing shell-based condor submit.
ShellBasedCondorSubmitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage
ShellBasedFileSystemProvider - class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider.: FileSystemProvider implementation that exposes the file system from the associated shell
ShellBasedFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider
StageInStage - class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage.: DRMConnector Stage that stages files (according to the jsdl:DataStaging elements) into the administrator configured file system.
StageInStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage
StageOutStage - class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage.: DRMConnector Stage that stages files (according to the jsdl:DataStaging elements) out of the administrator configured file system to the specified destination.
StageOutStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage
StandardJobProperties - class org.icenigrid.gridsam.core.StandardJobProperties.: Created by IntelliJ IDEA.
StandardJobProperties() - Constructor for class org.icenigrid.gridsam.core.StandardJobProperties
StateTransitionException - exception org.icenigrid.gridsam.core.StateTransitionException.: Exception thrown by a JobStateMachine when a JobInstance's state cannot be advanced
StateTransitionException() - Constructor for class org.icenigrid.gridsam.core.StateTransitionException: Constructs a new exception with null as its detail message.
StateTransitionException(String) - Constructor for class org.icenigrid.gridsam.core.StateTransitionException: Constructs a new exception with the specified detail message.
StateTransitionException(Throwable) - Constructor for class org.icenigrid.gridsam.core.StateTransitionException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
StateTransitionException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.StateTransitionException: Constructs a new exception with the specified detail message and cause.
SubmissionException - exception org.icenigrid.gridsam.core.SubmissionException.: Exception thrown when there is an error in the job submission process
SubmissionException() - Constructor for class org.icenigrid.gridsam.core.SubmissionException: Constructs a new exception with null as its detail message.
SubmissionException(String) - Constructor for class org.icenigrid.gridsam.core.SubmissionException: Constructs a new exception with the specified detail message.
SubmissionException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.SubmissionException: Constructs a new exception with the specified detail message and cause.
SubmissionException(Throwable) - Constructor for class org.icenigrid.gridsam.core.SubmissionException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
sLog - Static variable in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage: logger
sanityCheck(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: sanity check
saveCredential(JobContext, GSSCredential) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport: save the MyProxy credential to the job context
schedule(DRMConnector) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given DRMConnector for immediate execution in this job context for the current job
schedule(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given named DRMConnector for immediate execution in this job context for the current job
schedule(DRMConnector, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given DRMConnector for repeated execution in this job context for the current job
schedule(String, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given named DRMConnector for immediate execution in this job context for the current job
schedule(DRMConnector, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given DRMConnector for repeated execution in this job context for the current job
schedule(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext: schedule the given named DRMConnector for immediate execution in this job context for the current job
schedule(JobInstance, DRMConnector) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, DRMConnector, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given DRMConnector for repeated execution in this job context for the given job
schedule(JobInstance, String, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, DRMConnector, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given DRMConnector for repeated execution in this job context for the given job
schedule(JobInstance, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(DRMConnector) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given DRMConnector for immediate execution in this job context
schedule(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given named DRMConnector for immediate execution in this job context
schedule(DRMConnector, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given DRMConnector for repeated execution in this job context
schedule(String, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given named DRMConnector for immediate execution in this job context
schedule(DRMConnector, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given DRMConnector for repeated execution in this job context
schedule(String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: schedule the given named DRMConnector for immediate execution in this job context
schedule(JobInstance, DRMConnector) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, DRMConnector, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given DRMConnector for repeated execution in this job context for the given job
schedule(JobInstance, String, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(JobInstance, DRMConnector, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given DRMConnector for repeated execution in this job context for the given job
schedule(JobInstance, String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule the given named DRMConnector for immediate execution in this job context for the given job
schedule(DRMConnectorDescriptor) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: schedule an execution of a DRMConnector defined by the descriptor
scheduleImmediately() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: get the DRMConnector that has been added by the schedule operations to be scheduled immediately.
scheduleImmediately() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: get the DRMConnector that has been added by the schedule operations to be scheduled immediately
scheduleJob(JobDetail, Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
scheduleJob(Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
select(Node, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.DOM4JCategory: 'select' method on a DOM4J Node for performing xpath selection
select(Node, String, Map) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.DOM4JCategory: 'select' method on a DOM4J Node for performing xpath selection
select(Node, String, Map, Closure) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.DOM4JCategory: 'select' method on a DOM4J Node for performing xpath selection
selectNodes(Node, String) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: select a list of nodes from the document determined by the xpath expression
selectNodes(Node, String) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: select a list of nodes from the document determined by the xpath expression
selectSingleNode(Node, String) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: select a single node from the document determined by the xpath expression
selectSingleNode(Node, String) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: select a single node from the document determined by the xpath expression
setCondorLogFile(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: set condor log file location
setCondorRmCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: set the condor_rm command
setCondorSubmitCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: set the full path of the condor_submit command used by DRMConnector
setCopyToSpool(boolean) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: should the binary be copy to the condor spool directory if the executable is staged in
setDate(Timestamp) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: set the date when this stage is entered
setDescription(String) - Method in interface org.icenigrid.gridsam.core.JobStage: set the description associated with this stage
setDescription(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: set the description associated with this stage
setGSSCredential(FileSystemOptions, GSSCredential) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder: set the access credential
setHost(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
setID(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: set the job ID
setInterrupted(boolean) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext: set the interrupted flag
setJobDescription(String) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance: set the job description
setJobDescription(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: set the job description
setJobID(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: set the job id this drmconnector is schedule to perform on
setJobManager(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage
setJobStages(List) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: set the job status history
setKeyfile(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
setMaximumRetryCount(int) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage: set the retry count
setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector: set the wait between monitoring cycle
setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector: set the wait between monitoring cycle
setNext(String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setNext(DRMConnector, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setNext(String, long, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setNext(DRMConnector, long, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setNext(String, String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setNext(DRMConnector, String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the next DRMConnector in the chain
setPassphrase(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
setPassword(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig
setPasswordAuthentication(PasswordAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
setPort(int) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
setPosixShellPath(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell: set the path to the posix shell executable
setPreference(int) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties: set the preference ranking associated with the properties.
setProperties(Map) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance: set the properties associated with the job
setProperties(Properties) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: set properties
setProperties(Map) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: set the properties associated with the job
setProvider(FileSystemProvider) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider: set the delegate
setPublicKeyAuthentication(PublicKeyAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
setRegistry(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: set the object registry
setRootFileSystemURI(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider: set the root file system URI
setSchedule(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the schedule
setSchedule(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: set the schedule
setSchedule(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: set the schedule as a cron expression
setSchedule(long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor: set the schedule as a repeat interval
setScriptResource(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector: set script location
setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: set the shell to use
setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage: set the shell to use
setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider: set the shell to inherit the file system from
setSpoolDirectory(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage: set spooling directory
setState(JobState) - Method in interface org.icenigrid.gridsam.core.JobStage: set the state
setState(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: set the state
setTailCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: set condor log file location
setUser(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
setValues(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties: add new entries
setVersion(long) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: set version
setVersion(long) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: set version
setupThread() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
shutdown() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: shutdown the JobManager
shutdown() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: shutdown the JobManager
shutdown() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry
shutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
shutdown(boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
sqlTypes() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum: Return the SQL type codes for the columns mapped by this type.
start(int, int) - Method in interface org.icenigrid.gridsam.client.cli.GridSAMStressTest.Reporter: the test is started
start(int, int) - Method in class org.icenigrid.gridsam.client.cli.GridSAMStressTest.XMLReporter: the test is started
start() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
submitGlobusJob(JobContext, AbstractRslNode, String, GSSCredential) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage: Submit a RSL document to a GRAM job manager.
submitJob(SOAPElement) - Method in interface org.icenigrid.gridsam.client.api.JobSubmissionPortType
submitJob(SOAPElement) - Method in class org.icenigrid.gridsam.client.api.JobSubmissionPortType_Impl
submitJob(String) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: submit a job to this JobManager instance
submitJob(String) - Method in class org.icenigrid.gridsam.client.common.GridSAMClientSupport: submit a job to a service
submitJob(String) - Method in interface org.icenigrid.gridsam.core.JobManager: submit a job to this JobManager instance
submitJob(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: submit a job to this JobManager instance
submitJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: submit a job
submitJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl: submit a job
submitJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: submit a job
submitJobThroughDrmaa(JobContext, Session) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage: fork the job using the attached Shell
suspend() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: suspend the JobManager.
suspend() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: suspend the JobManager.

T

TERMINATED - Static variable in class org.icenigrid.gridsam.core.JobState: The job has been terminated by user
TERMINATING - Static variable in class org.icenigrid.gridsam.core.JobState: The job is being terminated by user
TerminalStage - class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage.: A terminal stage that marks the job as terminated
TerminalStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage
Transaction - interface org.icenigrid.gridsam.core.plugin.Transaction.: Interface defining operations to deal with a persistence transaction
terminate(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager This implementation schedules the DRMConnector named "gridsam.TerminalStage", which will mark the job as terminated.
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage: handle job termination.
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMTerminateStage: handle job termination.
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager This implementation schedules the DRMConnector named "gridsam.TerminalStage", which will mark the job as terminated.
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager: called by the Job Manager to terminate the job previously handled by this DRMConnectorManager
terminateJob(SOAPElement) - Method in interface org.icenigrid.gridsam.client.api.JobControlPortType
terminateJob(SOAPElement) - Method in class org.icenigrid.gridsam.client.api.JobControlPortType_Impl
terminateJob(String) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: terminate the job identified
terminateJob(String) - Method in class org.icenigrid.gridsam.client.common.GridSAMClientSupport: terminate the given job
terminateJob(String) - Method in interface org.icenigrid.gridsam.core.JobManager: terminate the job identified
terminateJob(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: terminate the job identified
terminateJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMService: terminate the job
terminateJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.GridSAMServiceAxisImpl: terminate the job
terminateJob(Document) - Method in class org.icenigrid.gridsam.webservice.axis.NullServiceAxisImpl: terminate the job
throwsFault(String) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: throw a server-side SOAP exception
throwsFault(String, Document) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: throw a server-side SOAP exception
throwsFault(String, Document[]) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: throw a server-side SOAP exception
throwsFault(QName, String, String, Document[]) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: throw a server-side SOAP exception
toJobIdentifier(JobInstance) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: convert a JobInstance object to a GridSAM JobStatus document
toJobStatus(JobInstance) - Static method in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: convert a JobInstance object to a GridSAM JobStatus document
toString() - Method in class org.icenigrid.gridsam.core.JobState: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: Returns a string representation of the object.
toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig
toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig
toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig
triggerJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
triggerJobWithVolatileTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

U

UNDEFINED - Static variable in class org.icenigrid.gridsam.core.JobState: The job state is undefined
URI_JOB_EXITCODE - Static variable in class org.icenigrid.gridsam.webservice.support.GridSAMSupport: Property name: job exit code
UnknownJobException - exception org.icenigrid.gridsam.core.UnknownJobException.: Exception thrown when a named job cannot be found
UnknownJobException() - Constructor for class org.icenigrid.gridsam.core.UnknownJobException: Constructs a new exception with null as its detail message.
UnknownJobException(String) - Constructor for class org.icenigrid.gridsam.core.UnknownJobException: Constructs a new exception with the specified detail message.
UnknownJobException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.UnknownJobException: Constructs a new exception with the specified detail message and cause.
UnknownJobException(Throwable) - Constructor for class org.icenigrid.gridsam.core.UnknownJobException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
UnknownJobFaultMessage - exception org.icenigrid.gridsam.client.api.UnknownJobFaultMessage.
UnknownJobFaultMessage(SOAPElement) - Constructor for class org.icenigrid.gridsam.client.api.UnknownJobFaultMessage
UnsupportedFeatureException - exception org.icenigrid.gridsam.core.UnsupportedFeatureException.: Exception thrown when an attribute defined in the job description is not supported
UnsupportedFeatureException() - Constructor for class org.icenigrid.gridsam.core.UnsupportedFeatureException: Constructs a new exception with null as its detail message.
UnsupportedFeatureException(String) - Constructor for class org.icenigrid.gridsam.core.UnsupportedFeatureException: Constructs a new exception with the specified detail message.
UnsupportedFeatureException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.UnsupportedFeatureException: Constructs a new exception with the specified detail message and cause.
UnsupportedFeatureException(Throwable) - Constructor for class org.icenigrid.gridsam.core.UnsupportedFeatureException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
unregisterChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.client.common.ClientSideJobManager: unregister a previously registered listener with the given job ID
unregisterChangeListener(String, JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.JobManager: unregister a previously registered listener with the given job ID
unregisterChangeListener(JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: unregister a previously registered listener
unregisterChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: unregister a previously registered listener with the given job ID
unregisterChangeListener(JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: unregister a previously registered listener
unschedule() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext: unschedule the currently executing DRMConnector task this context is associated with.
unschedule() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext: unschedule the currently executing DRMConnector task this context is associated with.
unscheduleJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate
unsuspend() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager: unsuspend the JobManager if the JobManager has previously been suspended.
unsuspend() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean: unsuspend the JobManager if the JobManager has previously been suspended.
updateJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore: store or update a job instance object
updateJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore: store or update a job instance object

V

VFSSupport - class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport.: Support class for virtual file system
VFSSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport
ValidatingStage - class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage.: A DRMConnector implementation that represents the task to validate a JSDL document associated with the current job
ValidatingStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage
ValidationException - exception org.icenigrid.gridsam.core.jsdl.ValidationException.: Exception class denoting a validation exception in the job description language
ValidationException() - Constructor for class org.icenigrid.gridsam.core.jsdl.ValidationException: Constructs a new exception with null as its detail message.
ValidationException(String) - Constructor for class org.icenigrid.gridsam.core.jsdl.ValidationException: Constructs a new exception with the specified detail message.
ValidationException(Throwable) - Constructor for class org.icenigrid.gridsam.core.jsdl.ValidationException: Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).
ValidationException(String, Throwable) - Constructor for class org.icenigrid.gridsam.core.jsdl.ValidationException: Constructs a new exception with the specified detail message and cause.
validate(Document) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently
validate(Reader) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently
validate(InputStream) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport: validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently
valueForSymbol(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

W

WORKING_DIRECTORY - Static variable in class org.icenigrid.gridsam.core.StandardJobProperties: working directory
waitFor() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process: causes the current thread to wait, if necessary, until the process represented by this Process object has terminated.
wasInStage(JobState) - Method in interface org.icenigrid.gridsam.core.JobInstance: test whether the job has been in the given state
wasInStage(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance: test whether the job has been in the given state
writeCondorSubmissionScript(JobContext, PrintWriter) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage: write the condor submission script to the print writer

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